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Super Yoshi's Island is the third Yoshi's Island game. There is a multiplayer mode where you and another Yoshi can play through levels together.
- Baby Bowser - Special move: Baby Clown Car
- Baby Mario - Special move: Hammer Slam
- Baby Luigi - Special move: Weegee Scream
- Baby Peach - Special move: Perry Float
- Baby Toad - Special move: Toad Shield
- Baby Wario - Special move: Wario Bombs
- Baby Waluigi - Special move: Tennis Slammer
- Baby DK - Special move: Bongo Bam
- Baby Koopa the Quick - Special move: Koopa Run
- Baby Yoshi - Special move: Super Yoshi
- Mouser (unbeatable)
- Burt the Bashful
- Baby King Boo
- Baby Bowser
- Metal Baby Mario
- Baby Mr. L
- Baby King K. Rool
- Baby King Bob-omb
- Mouser & Kamek
- Special World Boss: Cosmic boshi
The gameplay is similar to all of the Yoshi's Island series gameplay, but with a few quirks. The babies' Special Moves that can only be used once a level, and when Yoshi gets 100 coins, he earns wings and can fly for a short time.